org.wandora.application.tools.importers

Class GOAImport.GOAParser

java.lang.Object

org.wandora.application.tools.importers.GOAImport.GOAParser

Enclosing class:

GOAImport

public class GOAImport.GOAParser
extends java.lang.Object

OBOParser class implements parser for OBO flat file format. OBOImport uses the parser to convert OBO flat files to Topic Maps.

Field Summary

Fields

Modifier and Type	Field and Description
boolean	debug
static java.lang.String	GOA_ASPECT_SI
static java.lang.String	GOA_ASSIGNEDBY_SI
static java.lang.String	GOA_DATABASE_SI
static java.lang.String	GOA_DATE_SI
static java.lang.String	GOA_EVIDENCECODE_SI
static java.lang.String	GOA_OBJECT_SI
static java.lang.String	GOA_OBJECTTYPE_SI
static java.lang.String	GOA_ORDER_SI
static java.lang.String	GOA_QUALIFIER_SI
static java.lang.String	GOA_REFERENCE_SI
static java.lang.String	GOA_SI
static java.lang.String	GOA_SYMBOL_SI
static java.lang.String	GOA_SYNONYM_SI
static java.lang.String	GOA_TAXON_SI
static java.lang.String	GOA_WITHORFROM_SI
private java.io.BufferedReader	in
private GOAImport	parent
private Topic	root
static java.lang.String	SCHEMA_SI
private TopicMap	tm
private Topic	wandoraClass

Constructor Summary

Constructors

Constructor and Description
GOAParser(java.io.BufferedReader in, TopicMap tm, GOAImport parent) Constructor for GOAParser.

Method Summary

Modifier and Type	Method and Description
Association	createAssociation(java.lang.String associationType, Topic player1Topic, java.lang.String role1, Topic player2Topic, java.lang.String role2)
Association	createAssociation(java.lang.String associationType, Topic player1Topic, java.lang.String role1, Topic player2Topic, java.lang.String role2, Topic player3Topic, java.lang.String role3)
Topic	createSchemaTypeTopic(TopicMap tm)
Topic	createTopicForSchemaTerm(TopicMap tm, java.lang.String schemaTerm)
private Topic	getOrCreateTopic(Locator si, java.lang.String basename)
private Topic	getOrCreateTopic(java.lang.String si)
private Topic	getOrCreateTopic(java.lang.String si, java.lang.String basename)
void	initializeTopicMap(TopicMap tm) Creates frequently used topics into the Topic Map before conversion starts.
private void	makeSubclassOf(Topic t, Topic superclass)
void	parse()
private void	processFields(java.lang.String[] fields)
private void	setData(Topic t, Topic type, java.lang.String lang, java.lang.String text)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

SCHEMA_SI

public static final java.lang.String SCHEMA_SI

See Also:

Constant Field Values

GOA_SI

public static final java.lang.String GOA_SI

See Also:

Constant Field Values

GOA_OBJECT_SI

public static final java.lang.String GOA_OBJECT_SI

See Also:

Constant Field Values

GOA_DATABASE_SI

public static final java.lang.String GOA_DATABASE_SI

See Also:

Constant Field Values

GOA_SYMBOL_SI

public static final java.lang.String GOA_SYMBOL_SI

See Also:

Constant Field Values

GOA_QUALIFIER_SI

public static final java.lang.String GOA_QUALIFIER_SI

See Also:

Constant Field Values

GOA_REFERENCE_SI

public static final java.lang.String GOA_REFERENCE_SI

See Also:

Constant Field Values

GOA_EVIDENCECODE_SI

public static final java.lang.String GOA_EVIDENCECODE_SI

See Also:

Constant Field Values

GOA_WITHORFROM_SI

public static final java.lang.String GOA_WITHORFROM_SI

See Also:

Constant Field Values

GOA_ASPECT_SI

public static final java.lang.String GOA_ASPECT_SI

See Also:

Constant Field Values

GOA_SYNONYM_SI

public static final java.lang.String GOA_SYNONYM_SI

See Also:

Constant Field Values

GOA_OBJECTTYPE_SI

public static final java.lang.String GOA_OBJECTTYPE_SI

See Also:

Constant Field Values

GOA_TAXON_SI

public static final java.lang.String GOA_TAXON_SI

See Also:

Constant Field Values

GOA_DATE_SI

public static final java.lang.String GOA_DATE_SI

See Also:

Constant Field Values

GOA_ASSIGNEDBY_SI

public static final java.lang.String GOA_ASSIGNEDBY_SI

See Also:

Constant Field Values

GOA_ORDER_SI

public static final java.lang.String GOA_ORDER_SI

See Also:

Constant Field Values

debug

public boolean debug

tm

private TopicMap tm

parent

private GOAImport parent

in

private java.io.BufferedReader in

root

private Topic root

wandoraClass

private Topic wandoraClass

Constructor Detail

GOAParser

public GOAParser(java.io.BufferedReader in,
                 TopicMap tm,
                 GOAImport parent)

Constructor for GOAParser.

Parameters:

in - is the BufferedReader for GOA formatted file.

tm - is the Topic Map object where conversion is stored.

parent - is the GOAImport callback interface.

Method Detail

initializeTopicMap

public void initializeTopicMap(TopicMap tm)

Creates frequently used topics into the Topic Map before conversion starts.

Parameters:

tm - is the Topic Map where initialization is targeted.

parse

public void parse()

processFields

private void processFields(java.lang.String[] fields)

createAssociation

public Association createAssociation(java.lang.String associationType,
                                     Topic player1Topic,
                                     java.lang.String role1,
                                     Topic player2Topic,
                                     java.lang.String role2,
                                     Topic player3Topic,
                                     java.lang.String role3)
                              throws TopicMapException

Throws:

TopicMapException

createAssociation

public Association createAssociation(java.lang.String associationType,
                                     Topic player1Topic,
                                     java.lang.String role1,
                                     Topic player2Topic,
                                     java.lang.String role2)
                              throws TopicMapException

Throws:

TopicMapException

createSchemaTypeTopic

public Topic createSchemaTypeTopic(TopicMap tm)
                            throws TopicMapException

Throws:

TopicMapException

createTopicForSchemaTerm

public Topic createTopicForSchemaTerm(TopicMap tm,
                                      java.lang.String schemaTerm)
                               throws TopicMapException

Throws:

TopicMapException

getOrCreateTopic

private Topic getOrCreateTopic(java.lang.String si,
                               java.lang.String basename)

getOrCreateTopic

private Topic getOrCreateTopic(java.lang.String si)

getOrCreateTopic

private Topic getOrCreateTopic(Locator si,
                               java.lang.String basename)

setData

private void setData(Topic t,
                     Topic type,
                     java.lang.String lang,
                     java.lang.String text)
              throws TopicMapException

Throws:

TopicMapException

makeSubclassOf

private void makeSubclassOf(Topic t,
                            Topic superclass)